Everything


All Classes

pytom.alignment.ExMaxAlignment.ExMaxJob
pytom.alignment.ExMaxAlignment.ExMaxManager
pytom.alignment.ExMaxAlignment.ExMaxWorker
pytom.alignment.GLocalSampling.GLocalSamplingJob
pytom.alignment.GLocalSampling.SamplingParameters
pytom.alignment.GLocalSampling.ScoringParameters
pytom.alignment.GrowingAverage.GAManager
pytom.alignment.GrowingAverage.GAWorker
pytom.alignment.GrowingAverage.GrowingAverageInterimResult
pytom.alignment.GrowingAverage.GrowingAverageJob
pytom.alignment.GrowingAverage.GrowingAverageJobMessage
pytom.alignment.GrowingAverage.GrowingAverageResultMessage
pytom.alignment.MultiRefStructures.MCOEXMXAlignJob
pytom.alignment.localOptimization.Alignment
pytom.alignment.preprocessing.Preprocessing
pytom.alignment.preprocessing.Prerotation
pytom.alignment.structures.AlignmentList
pytom.alignment.structures.ExpectationJob
pytom.alignment.structures.ExpectationMaximisationJob
pytom.alignment.structures.ExpectationResult
pytom.alignment.structures.GrowingAverageInterimResult
pytom.alignment.structures.GrowingAverageJob
pytom.alignment.structures.MaximisationJob
pytom.alignment.structures.MaximisationResult
pytom.alignment.structures.Peak
pytom.angles.angle.AngleObject
pytom.angles.angleList.AngleError
pytom.angles.angleList.AngleList
pytom.angles.angleList.EulerAngleList
pytom.angles.angleList.OneAngleList
pytom.angles.av3Sampling.AV3Sampling
pytom.angles.combined.GlobalLocalCombined
pytom.angles.fromFile.AngleListFromEM
pytom.angles.globalSampling.GlobalSampling
pytom.angles.localSampling.AV3Sampling
pytom.angles.localSampling.ExtendedInplaneSampling
pytom.angles.localSampling.LocalSampling
pytom.angles.quaternions.Quaternion
pytom.basic.exceptions.FourierSingletonError
pytom.basic.exceptions.ParallelError
pytom.basic.exceptions.ParameterError
pytom.basic.files.EMHeader
pytom.basic.files.NaiveAtom
pytom.basic.fourier.FourierTuple
pytom.basic.fourier.FtSingleton
pytom.basic.structures.BandPassFilter
pytom.basic.structures.DoubleTiltWedge
pytom.basic.structures.GeneralWedge
pytom.basic.structures.HelicalSymmetry
pytom.basic.structures.Mask
pytom.basic.structures.MultiSymmetries
pytom.basic.structures.Particle
pytom.basic.structures.ParticleList
pytom.basic.structures.PickPosition
pytom.basic.structures.PointSymmetry
pytom.basic.structures.PyTomClass
pytom.basic.structures.PyTomClassError
pytom.basic.structures.Reference
pytom.basic.structures.ReferenceList
pytom.basic.structures.Resolution
pytom.basic.structures.Rotation
pytom.basic.structures.SampleInformation
pytom.basic.structures.Shift
pytom.basic.structures.SingleTiltWedge
pytom.basic.structures.Symmetry
pytom.basic.structures.Wedge
pytom.basic.structures.WedgeInfo
pytom.classification.calculate_correlation_matrix.CMWorker
pytom.cluster.correlationMatrix.CMManager
pytom.cluster.correlationMatrix.CMWorker
pytom.cluster.correlationMatrixStructures.CorrelationMatrixJob
pytom.cluster.correlationMatrixStructures.CorrelationVector
pytom.cluster.correlationMatrixStructures.CorrelationVectorJob
pytom.cluster.mcoACStructures.AnnealingCriterion
pytom.cluster.mcoACStructures.AnnealingTemperature
pytom.cluster.mcoACStructures.MCOACJob
pytom.cluster.mcoACStructures.MetropolisCriterion
pytom.cluster.mcoACStructures.RandomJump
pytom.cluster.mcoACStructures.SigmaTemperature
pytom.cluster.mcoACStructures.ThresholdAcceptance
pytom.cluster.mcoEXMXStructures.Cluster
pytom.cluster.mcoEXMXStructures.ClusterSwap
pytom.cluster.mcoEXMXStructures.KMDataSet
pytom.cluster.mcoEXMXStructures.MCOEXMXJob
pytom.cluster.mcoEXMXStructures.MCOEXMXWorker
pytom.cluster.mcoEXMXStructures.SwapList
pytom.frm.FRMAlignment.FRMJob
pytom.frm.FRMAlignment.FRMResult
pytom.frm.FRMAlignment.FRMScore
pytom.frm.FRMAlignment.FRMWorker
pytom.frm.GFRMAlignment.FRMJob
pytom.frm.GFRMAlignment.FRMResult
pytom.frm.GFRMAlignment.FRMScore
pytom.frm.GFRMAlignment.FRMWorker
pytom.frm.GWienerFilterAlignment.CTFCorrectionJob
pytom.frm.GWienerFilterAlignment.MultiDefocusJob
pytom.frm.GWienerFilterAlignment.MultiDefocusWorker
pytom.frm.GWienerFilterAlignment.ParticleListPair
pytom.frm.GWienerFilterAlignment.ParticleListSet
pytom.frm.WienerFilterAlignment.CTFCorrectionJob
pytom.frm.WienerFilterAlignment.MultiDefocusJob
pytom.frm.WienerFilterAlignment.MultiDefocusWorker
pytom.frm.WienerFilterAlignment.ParticleListPair
pytom.frm.WienerFilterAlignment.ParticleListSet
pytom.frontend.pytomServer.PyTomHTTPServer
pytom.frontend.serverpages.serverMessages.DataMessage
pytom.frontend.serverpages.serverMessages.ErrorMessage
pytom.frontend.serverpages.serverMessages.FileMessage
pytom.frontend.serverpages.serverMessages.PyTomServerMessage
pytom.image2D.imageStructures.Image
pytom.image2D.imageStructures.ImageStack
pytom.localization.extraction_peak_result.ExPeakResult
pytom.localization.parallel_extract_peaks.PeakLeader
pytom.localization.parallel_extract_peaks.PeakManager
pytom.localization.parallel_extract_peaks.PeakWorker
pytom.localization.peak_job.JobInfo
pytom.localization.peak_job.PeakJob
pytom.localization.peak_job.PeakResult
pytom.localization.peak_job_msg.PeakJobMsg
pytom.localization.peak_job_msg.PeakResultMsg
pytom.localization.structures.ClassifiedParticle
pytom.localization.structures.FoundParticle
pytom.localization.structures.Orientation
pytom.localization.structures.ParticleList
pytom.localization.structures.Volume
pytom.parallel.alignmentMessages.ExpectationJobMsg
pytom.parallel.alignmentMessages.ExpectationResultMsg
pytom.parallel.alignmentMessages.GrowingAverageJobMessage
pytom.parallel.alignmentMessages.GrowingAverageResultMessage
pytom.parallel.alignmentMessages.MaximisationJobMsg
pytom.parallel.alignmentMessages.MaximisationResultMsg
pytom.parallel.clusterMessages.CorrelationVectorJobMessage
pytom.parallel.clusterMessages.CorrelationVectorMessage
pytom.parallel.messages.Message
pytom.parallel.messages.MessageError
pytom.parallel.messages.StatusMessage
pytom.parallel.parallelWorker.ParallelWorker
pytom.reconstruction.TiltAlignmentStructures.Marker
pytom.reconstruction.TiltAlignmentStructures.TiltAlignment
pytom.reconstruction.TiltAlignmentStructures.TiltAlignmentParameters
pytom.reconstruction.TiltAlignmentStructures.TiltSeries
pytom.reconstruction.parallelReconstruction.ReconstructionMessage
pytom.reconstruction.parallelReconstruction.ReconstructionWorker
pytom.reconstruction.reconstructionStructures.Projection
pytom.reconstruction.reconstructionStructures.ProjectionList
pytom.reconstruction.reconstructionStructures.Reconstruction
pytom.reconstruction.reconstructionStructures.WeightedBackprojection
pytom.score.score.FLCFScore
pytom.score.score.FSCScore
pytom.score.score.MFCScore
pytom.score.score.POFScore
pytom.score.score.PeakPrior
pytom.score.score.RScore
pytom.score.score.SOCScore
pytom.score.score.Score
pytom.score.score.nxcfScore
pytom.score.score.xcfScore
pytom.tools.ProgressBar.FixedProgBar
pytom.tools.ProgressBar.ProgressBar
pytom.tools.display.VolDsp
pytom.tools.log.Log
pytom.tools.maths.Identity
pytom.tools.maths.Matrix
pytom.tools.maths.TransformationMatrix
pytom.tools.maths.XRotationMatrix
pytom.tools.maths.YRotationMatrix
pytom.tools.maths.ZRotationMatrix
pytom.tools.memory.FilterStorage
pytom.tools.memory.Singleton
pytom.tools.memory.VolumeStorage
pytom.tools.memory.WedgeStorage
pytom.tools.script_helper.ScriptArg
pytom.tools.script_helper.ScriptHelper
pytom.tools.script_helper.ScriptOption
pytom.tools.timing.Timing

All Functions

pytom.alignment.ExMaxAlignment.parallelStart
pytom.alignment.ExMaxAlignment.resume
pytom.alignment.ExMaxAlignment.sequentialStart
pytom.alignment.GLocalSampling.alignOneParticle
pytom.alignment.GLocalSampling.alignOneParticleWrapper
pytom.alignment.GLocalSampling.alignParticleList
pytom.alignment.GLocalSampling.alignParticleListWrapper
pytom.alignment.GLocalSampling.averageParallel
pytom.alignment.GLocalSampling.mainAlignmentLoop
pytom.alignment.GLocalSampling.mergeLists
pytom.alignment.GLocalSampling.splitParticleList
pytom.alignment.GLocalSampling.writeParticleListToUniqueFile
pytom.alignment.GrowingAverage.growingAverage
pytom.alignment.GrowingAverage.growingAverageNew
pytom.alignment.MultiRefAlignment.multiRef_EXMXAlign
pytom.alignment.alignmentFunctions.FRMAlignmentWrapper
pytom.alignment.alignmentFunctions._disrtibuteAverageMPI
pytom.alignment.alignmentFunctions._rotateWedgeReference
pytom.alignment.alignmentFunctions.alignTwoVolumes
pytom.alignment.alignmentFunctions.alignmentProgressToHTML
pytom.alignment.alignmentFunctions.applySymmetryOnParticleList
pytom.alignment.alignmentFunctions.applySymmetryToVolume
pytom.alignment.alignmentFunctions.average
pytom.alignment.alignmentFunctions.average2
pytom.alignment.alignmentFunctions.averageWeighteBackProjection
pytom.alignment.alignmentFunctions.bestAlignment
pytom.alignment.alignmentFunctions.cloneMaximisationResult
pytom.alignment.alignmentFunctions.compareTwoVolumes
pytom.alignment.alignmentFunctions.distributeAverage
pytom.alignment.alignmentFunctions.invert_WedgeSum
pytom.alignment.localOptimization.alignVolumes
pytom.alignment.localOptimization.alignVolumesAndFilterByFSC
pytom.alignment.localOptimization.design_fsc_filter
pytom.alignment.structures.fromUnicode
pytom.angles.angle.fromStr
pytom.angles.angle.fromXML
pytom.angles.angleFnc.angleFromResolutionDeprecated
pytom.angles.angleFnc.angleObjectCheckDistance
pytom.angles.angleFnc.angleToUnitSphereVector
pytom.angles.angleFnc.arctan
pytom.angles.angleFnc.axisAngleToMat
pytom.angles.angleFnc.axisAngleToZXZ
pytom.angles.angleFnc.differenceAngleOfTwoRotations
pytom.angles.angleFnc.matToAxisAngle
pytom.angles.angleFnc.matToZXZ
pytom.angles.angleFnc.matToZYZ
pytom.angles.angleFnc.meanAndStdRotationDistance
pytom.angles.angleFnc.pointRotateZXZ
pytom.angles.angleFnc.rotationDistances
pytom.angles.angleFnc.rotationDistancesFromAngleList
pytom.angles.angleFnc.vector2euler
pytom.angles.angleFnc.z2XFromCenterVector
pytom.angles.angleFnc.zxzToAxisAngle
pytom.angles.angleFnc.zxzToMat
pytom.angles.angleFnc.zxzToZYZ
pytom.angles.angleFnc.zyzToMat
pytom.angles.angleList.angleRange
pytom.basic.correlation.FLCF
pytom.basic.correlation.FSC
pytom.basic.correlation.FSCSum
pytom.basic.correlation.bandCC
pytom.basic.correlation.bandCF
pytom.basic.correlation.determineResolution
pytom.basic.correlation.dev
pytom.basic.correlation.meanUnderMask
pytom.basic.correlation.meanValueUnderMask
pytom.basic.correlation.nXcf
pytom.basic.correlation.nxcc
pytom.basic.correlation.qint
pytom.basic.correlation.soc
pytom.basic.correlation.stdUnderMask
pytom.basic.correlation.stdValueUnderMask
pytom.basic.correlation.subPixelPeak
pytom.basic.correlation.subPixelPeakParabolic
pytom.basic.correlation.weightedXCC
pytom.basic.correlation.weightedXCF
pytom.basic.correlation.xcc
pytom.basic.correlation.xcf
pytom.basic.files.cutParticlesFromTomogram
pytom.basic.files.initSphere
pytom.basic.files.int32toint8
pytom.basic.files.int8toint32
pytom.basic.files.naivePDBParser
pytom.basic.files.pdb2em
pytom.basic.files.read
pytom.basic.files.readProxy
pytom.basic.files.readSubvolumeFromFourierspaceFile
pytom.basic.files.read_em
pytom.basic.files.read_em_header
pytom.basic.files.write_em
pytom.basic.files.write_em_header
pytom.basic.filter.bandpassFilter
pytom.basic.filter.circleFilter
pytom.basic.filter.convolutionCTF
pytom.basic.filter.filter
pytom.basic.filter.filter_volume_by_profile
pytom.basic.filter.fourierFilterShift
pytom.basic.filter.gaussian_filter
pytom.basic.filter.gridCTF
pytom.basic.filter.highpassFilter
pytom.basic.filter.lowpassFilter
pytom.basic.filter.profile2FourierVol
pytom.basic.filter.rampFilter
pytom.basic.filter.rotateWeighting
pytom.basic.filter.volCTF
pytom.basic.filter.wedgeFilter
pytom.basic.fourier.convolute
pytom.basic.fourier.fft
pytom.basic.fourier.fourierSizeOperation
pytom.basic.fourier.ftshift
pytom.basic.fourier.ifft
pytom.basic.fourier.iftshift
pytom.basic.fourier.powerspectrum
pytom.basic.functions.initSphere
pytom.basic.functions.limit_in_sphere
pytom.basic.functions.mirror
pytom.basic.functions.scale
pytom.basic.functions.taper_edges
pytom.basic.maths.determineRotationCenter
pytom.basic.maths.power
pytom.basic.normalise.mean0std1
pytom.basic.normalise.normaliseUnderMask
pytom.basic.normalise.subtractMeanUnderMask
pytom.basic.plot.plotClassSizes
pytom.basic.plot.plotFSC
pytom.basic.plot.plotScoreDevelopment
pytom.basic.resolution.angleFromResolution
pytom.basic.resolution.angstromToBand
pytom.basic.resolution.bandToAngstrom
pytom.basic.resolution.getResolutionBandFromFSC
pytom.basic.resolution.read_fscFromAscii
pytom.basic.resolution.saveForFSC
pytom.basic.resolution.write_fsc2Ascii
pytom.basic.statistics.averagePlanes
pytom.basic.statistics.mean
pytom.basic.statistics.statisticOfDistanceMatrix
pytom.basic.statistics.std
pytom.basic.structures.keyFunctionForParticleSortingByClassLabel
pytom.basic.structures.keyFunctionForParticleSortingByScore
pytom.basic.transformations.general_transform
pytom.basic.transformations.general_transform2d
pytom.basic.transformations.general_transform_crop
pytom.basic.transformations.mirror
pytom.basic.transformations.project
pytom.basic.transformations.resize
pytom.basic.transformations.resizeFourier
pytom.basic.transformations.rotate
pytom.basic.transformations.rotateFourierSpline
pytom.basic.transformations.scale
pytom.basic.transformations.shift
pytom.basic.transformations.transformFourierSpline
pytom.classification.CPCAfunctions.SVD_analysis
pytom.classification.CPCAfunctions.averageClasses
pytom.classification.CPCAfunctions.kmeansCluster
pytom.classification.CPCAfunctions.readCCC
pytom.classification.CPCAfunctions.subTomoClust
pytom.classification.auto_focus_classify.calculate_averages
pytom.classification.auto_focus_classify.calculate_difference_map
pytom.classification.auto_focus_classify.calculate_difference_map_proxy
pytom.classification.auto_focus_classify.calculate_prob
pytom.classification.auto_focus_classify.calculate_scores
pytom.classification.auto_focus_classify.classify
pytom.classification.auto_focus_classify.combinations
pytom.classification.auto_focus_classify.compare_pl
pytom.classification.auto_focus_classify.determine_class_labels
pytom.classification.auto_focus_classify.distance
pytom.classification.auto_focus_classify.focus_score
pytom.classification.auto_focus_classify.frm_proxy
pytom.classification.auto_focus_classify.initialize
pytom.classification.auto_focus_classify.paverage
pytom.classification.auto_focus_classify.score_noalign_proxy
pytom.classification.auto_focus_classify.split_topn_classes
pytom.classification.auto_focus_classify.voting
pytom.classification.classificationResults.assessClassification
pytom.classification.classificationResults.createClassificationResultDictionaries
pytom.cluster.analyze.determineRotationsByClassAssignment
pytom.cluster.analyze.extractClusterRotationsFromParticleList
pytom.cluster.clusterFunctions.determineClassSwaps
pytom.cluster.clusterFunctions.randomiseParticleListClasses
pytom.cluster.correlationMatrix.calculateCorrelationVector
pytom.cluster.correlationMatrix.clusterMatrix
pytom.cluster.correlationMatrix.decomposeMatrix
pytom.cluster.correlationMatrix.distributedCorrelationMatrix
pytom.cluster.correlationMatrix.scaleEigenVectors
pytom.cluster.mcoAC.classifyParticleList
pytom.cluster.mcoAC.classifyParticleListThreads
pytom.cluster.mcoAC.mcoAC
pytom.cluster.mcoACStructures.criterionFromXML
pytom.cluster.mcoACStructures.temperatureFromXML
pytom.cluster.mcoEXMX.classifyParticleList
pytom.cluster.mcoEXMX.clusterBisectKMeans
pytom.cluster.mcoEXMX.clusterKMeans
pytom.cluster.mcoEXMX.distributeExpectation
pytom.cluster.mcoEXMX.mcoEXMX
pytom.cluster.mcoEXMX.readClassFile
pytom.cluster.mcoEXMX.readKMFile
pytom.cluster.mcoEXMX.scaleKMDataSet
pytom.cluster.mcoEXMX.writeKMResult
pytom.frm.createJob.create_job_frm
pytom.frm.createJob.create_job_gfrm
pytom.frm.createJob.create_job_gwf
pytom.frm.createJob.create_job_wf
pytom.frontend.helperFunctions.htmlHeader200
pytom.frontend.helperFunctions.messageResponse
pytom.frontend.helperFunctions.pngHeader200
pytom.frontend.pytomServer.dispatchRequest
pytom.frontend.pytomServer.parsePythonRequest
pytom.frontend.pytomServer.parseQuery
pytom.frontend.serverpages.apiDocumentationURL.run
pytom.frontend.serverpages.createAlignmentJob.createRunscripts
pytom.frontend.serverpages.createAlignmentJob.interpretRequestParameters
pytom.frontend.serverpages.createAlignmentJob.run
pytom.frontend.serverpages.createLocalizationJob.createRunscripts
pytom.frontend.serverpages.createLocalizationJob.interpretRequestParameters
pytom.frontend.serverpages.createLocalizationJob.run
pytom.frontend.serverpages.createMCOACJob.createRunscripts
pytom.frontend.serverpages.createMCOACJob.interpretRequestParameters
pytom.frontend.serverpages.createMCOACJob.run
pytom.frontend.serverpages.createMCOEXMXJob.createRunscripts
pytom.frontend.serverpages.createMCOEXMXJob.interpretRequestParameters
pytom.frontend.serverpages.createMCOEXMXJob.run
pytom.frontend.serverpages.createReconstructionJob.createRunscripts
pytom.frontend.serverpages.createReconstructionJob.interpretRequestParameters
pytom.frontend.serverpages.createReconstructionJob.run
pytom.frontend.serverpages.imageSlice.run
pytom.frontend.serverpages.loadAlignmentJob.run
pytom.frontend.serverpages.loadParticleList.run
pytom.frontend.serverpages.loadProjectionList.run
pytom.frontend.serverpages.sendByteArray.run
pytom.frontend.serverpages.testFileDirExists.run
pytom.localization.estimateNumExtraction.usage
pytom.localization.extractPeaks.extractPeaks
pytom.localization.parallel_extract_peaks.getMsgStr
pytom.localization.structures.readParticleFile
pytom.reconstruction.bfactor.bfactor_restore
pytom.reconstruction.bfactor.create_bfactor_fnc
pytom.reconstruction.bfactor.create_bfactor_restore_fnc
pytom.reconstruction.bfactor.create_bfactor_restore_vol
pytom.reconstruction.bfactor.create_bfactor_vol
pytom.reconstruction.bfactor.sph2cart
pytom.reconstruction.markerPositionRefinement.refineMarkerPositions
pytom.reconstruction.parallelReconstruction.parallelReconstruction
pytom.reconstruction.reconstructionFunctions.adjustPickPositionInParticleList
pytom.reconstruction.reconstructionFunctions.positionInProjection
pytom.reconstruction.reconstructionFunctions.positionsInProjections
pytom.reconstruction.tiltAlignmentFunctions.alignmentFixMagRot
pytom.reconstruction.tiltAlignmentFunctions.applyPreshiftsToMarkers
pytom.reconstruction.tiltAlignmentFunctions.getIMODpreshifts
pytom.reconstruction.tiltAlignmentFunctions.markerResidual
pytom.reconstruction.tiltAlignmentFunctions.readIMODmarkerfile
pytom.reconstruction.tiltAlignmentFunctions.readIMODtiltAngles
pytom.reconstruction.tiltAlignmentFunctions.refineMarkerPositions
pytom.reconstruction.tiltAlignmentFunctions.simulate_markers
pytom.reconstruction.weightedBackprojection.getWeightedProjectionCube
pytom.reconstruction.weightedBackprojection.theta_vol_projection
pytom.reconstruction.writeAlignedProjections.writeAlignedProjections
pytom.reconstruction.xmippInterface.callXMIPPReconstruction
pytom.reconstruction.xmippInterface.checkAngles
pytom.reconstruction.xmippInterface.copyProjectionsForXMIPP
pytom.reconstruction.xmippInterface.getParticleTransformLines
pytom.reconstruction.xmippInterface.getTuples
pytom.reconstruction.xmippInterface.setReference
pytom.reconstruction.xmippInterface.setupXMIPP
pytom.reconstruction.xmippInterface.writeDoc
pytom.reconstruction.xmippInterface.writeLib
pytom.reconstruction.xmippInterface.xmippFourierReconstruction
pytom.score.score.FSCWrapper
pytom.score.score.FSFWrapper
pytom.score.score.Vol_G_Val
pytom.score.score.fromXML
pytom.score.score.fromXMLFile
pytom.score.score.peakCoef
pytom.score.score.wXCCWrapper
pytom.score.score.wXCFWrapper
pytom.score.score.weightedCoefficient
pytom.simulation.EMSimulation.simpleSimulation
pytom.simulation.whiteNoise.add
pytom.tools.ProgressBar.main
pytom.tools.files.checkDirExists
pytom.tools.files.checkFileExists
pytom.tools.files.dump2TextFile
pytom.tools.files.dumpMsg2Log
pytom.tools.files.generateCorrelationMatrixStartScript
pytom.tools.files.getPytomPath
pytom.tools.files.listFilesOfTypeInDir
pytom.tools.files.readSpider
pytom.tools.files.readStringFile
pytom.tools.files.simulationDescriptionToParticleList
pytom.tools.files.writeMatrix2RMatrix
pytom.tools.files.writeSpider
pytom.tools.macros.frange
pytom.tools.macros.volumesSameSize
pytom.tools.maths.checkEpsilon
pytom.tools.maths.euclidianDistance
pytom.tools.maths.gaussian_fit
pytom.tools.maths.listMean
pytom.tools.maths.listStd
pytom.tools.maths.mult
pytom.tools.maths.normalize2D
pytom.tools.maths.pcacov
pytom.tools.maths.plus
pytom.tools.maths.rotate_vector
pytom.tools.maths.rotate_vector2d
pytom.tools.maths.rotation_distance
pytom.tools.maths.scalar
pytom.tools.maths.scale
pytom.tools.memory._VmB
pytom.tools.memory.cleanUp
pytom.tools.memory.memory
pytom.tools.memory.printProcessStats
pytom.tools.memory.read
pytom.tools.memory.resident
pytom.tools.memory.stacksize
pytom.tools.parse_script_options.parse_script_options
pytom.tools.startup.pytom_help
pytom.tools.toImage._display
pytom.tools.toImage._dspcub
pytom.tools.toImage.display
pytom.tools.toImage.dspcub
pytom.tools.toImage.dspcub2PNG
pytom.tools.toImage.volumeSequenceToPNGs
pytom.tools.toImage.volumeToPNG
pytom.tools.volumes.checkerBoard
pytom.visualization.particleSpace.multipleParticlesVolume
pytom.visualization.particleSpace.particleVolume

All Variables

pytom.alignment.GLocalSampling.mpi
pytom.alignment.alignmentFunctions.analytWedge
pytom.angles.angle.deg2rad
pytom.angles.angle.rad2deg
pytom.basic.structures.analytWedge
pytom.classification.auto_focus_classify.mpi
pytom.frontend.pytomServer.fileTypePaths
pytom.frontend.pytomServer.pytomPath
pytom.frontend.pytomServer.verbose
pytom.tools.maths.epsilon
pytom.tools.memory._proc_status
pytom.tools.memory._scale

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