Table of Contents


Everything

Modules

pytom
pytom.alignment
pytom.alignment.ExMaxAlignment
pytom.alignment.GLocalSampling
pytom.alignment.GrowingAverage
pytom.alignment.MultiRefAlignment
pytom.alignment.MultiRefStructures
pytom.alignment.alignmentFunctions
pytom.alignment.localOptimization
pytom.alignment.preprocessing
pytom.alignment.structures
pytom.angles
pytom.angles.angle
pytom.angles.angleFnc
pytom.angles.angleList
pytom.angles.av3Sampling
pytom.angles.combined
pytom.angles.fromFile
pytom.angles.globalSampling
pytom.angles.localSampling
pytom.angles.quaternions
pytom.basic
pytom.basic.correlation
pytom.basic.exceptions
pytom.basic.files
pytom.basic.filter
pytom.basic.fourier
pytom.basic.functions
pytom.basic.maths
pytom.basic.normalise
pytom.basic.plot
pytom.basic.resolution
pytom.basic.statistics
pytom.basic.structures
pytom.basic.transformations
pytom.classification
pytom.classification.CPCAfunctions
pytom.classification.auto_focus_classify
pytom.classification.calculate_correlation_matrix
pytom.classification.classificationResults
pytom.cluster
pytom.cluster.analyze
pytom.cluster.clusterFunctions
pytom.cluster.correlationMatrix
pytom.cluster.correlationMatrixStructures
pytom.cluster.mcoAC
pytom.cluster.mcoACStructures
pytom.cluster.mcoEXMX
pytom.cluster.mcoEXMXStructures
pytom.frm
pytom.frm.FRMAlignment
pytom.frm.GFRMAlignment
pytom.frm.GWienerFilterAlignment
pytom.frm.WienerFilterAlignment
pytom.frm.createJob
pytom.frontend
pytom.frontend.helperFunctions
pytom.frontend.pytomServer
pytom.frontend.serverpages
pytom.frontend.serverpages.apiDocumentationURL
pytom.frontend.serverpages.createAlignmentJob
pytom.frontend.serverpages.createLocalizationJob
pytom.frontend.serverpages.createMCOACJob
pytom.frontend.serverpages.createMCOEXMXJob
pytom.frontend.serverpages.createReconstructionJob
pytom.frontend.serverpages.imageSlice
pytom.frontend.serverpages.loadAlignmentJob
pytom.frontend.serverpages.loadParticleList
pytom.frontend.serverpages.loadProjectionList
pytom.frontend.serverpages.sendByteArray
pytom.frontend.serverpages.serverMessages
pytom.frontend.serverpages.testFileDirExists
pytom.image2D
pytom.image2D.imageStructures
pytom.localization
pytom.localization.cutParticlesFromProjs
pytom.localization.estimateNumExtraction
pytom.localization.extractPeaks
pytom.localization.extraction_peak_result
pytom.localization.getSubtoms
pytom.localization.parallel_extract_peaks
pytom.localization.peak_job
pytom.localization.peak_job_msg
pytom.localization.selectParticleList
pytom.localization.structures
pytom.parallel
pytom.parallel.alignmentMessages
pytom.parallel.clusterMessages
pytom.parallel.messages
pytom.parallel.parallelWorker
pytom.reconstruction
pytom.reconstruction.TiltAlignmentStructures
pytom.reconstruction.bfactor
pytom.reconstruction.markerPositionRefinement
pytom.reconstruction.parallelReconstruction
pytom.reconstruction.reconstruct_INFR
pytom.reconstruction.reconstruct_subvolumes_INFR
pytom.reconstruction.reconstruct_wbp
pytom.reconstruction.reconstructionFunctions
pytom.reconstruction.reconstructionStructures
pytom.reconstruction.tiltAlignmentFunctions
pytom.reconstruction.weightedBackprojection
pytom.reconstruction.writeAlignedProjections
pytom.reconstruction.xmippInterface
pytom.score
pytom.score.score
pytom.simulation
pytom.simulation.EMSimulation
pytom.simulation.whiteNoise
pytom.tools
pytom.tools.ProgressBar
pytom.tools.display
pytom.tools.files
pytom.tools.log
pytom.tools.macros
pytom.tools.maths
pytom.tools.memory
pytom.tools.parse_script_options
pytom.tools.plotAngleDistribution
pytom.tools.script_helper
pytom.tools.startup
pytom.tools.timing
pytom.tools.toImage
pytom.tools.volumes
pytom.visualization
pytom.visualization.particleSpace

[hide private]